phenotype.h

#ifndef _PHENOTYPE_H_
#define _PHENOTYPE_H_

#include <cstring>

#include <iostream>
#include <cfloat>
#include <iomanip>
#include <vector>
#include <sstream>

#ifdef EIGEN
//#include "Eigen/Core"
#endif

#include "typedef.h"
#include "data.h"
#include "stream_tools.h"

class Phenotype : public Data{ 
private:
    void write (std::ostream&) const;   
    void read (std::istream&);      
    static const Registration registered;
    static Data * create(const std::vector <std::string> & Columns){
        return new Phenotype(Columns);
    }
    size_t n_samples_, n_traits_;
public:
    char delim; 

    std::vector <std::string> sample_name;
    std::vector <std::string> trait;

#ifdef EIGEN
    //Eigen::MatrixXf value;
#else
    std::vector <std::vector <real_t > > value;
#endif

    Phenotype();    
    Phenotype(const std::vector <std::string> &); 
    Phenotype(const size_t &); 

    std::string header(void) const;
    size_t size(void) const;


    void add_sample(const uint32_t &, const real_t *);
//  void clear(void); 
//  void zero(void);  

    static const std::string file_name; 
    static const std::string table_name;    

    const std::string get_file_name(void) const;
    const std::string get_table_name(void) const;

    static const bool binary;

    const bool get_binary() const;

//  const size_t sample_size(void) const;

};

#endif