Inheritance diagram for Relatedness:

Collaboration diagram for Relatedness:

Public Member Functions
	Relatedness (const std::vector< std::string > &)
	delegating a necessary constructor.

	Relatedness (const std::string &, const std::string &)
	construct with names.

std::string	header (void) const
	The header line of plain text files.

size_t	size (void) const
	Size in bytes for binary read/write.

void	set_X_name (const std::string &)
	Sets the name of the X sample.

void	set_X_name (const id0_t &)

void	set_Y_name (const std::string &)
	Sets the name of the Y sample.

void	set_Y_name (const id0_t &)

void	clear (void)
	zeros statistics and sets names to empty.

void	zero (void)
	zeros statistics, but doesn't set names to empty. More...

const std::string	get_file_name (void) const

const std::string	get_table_name (void) const

const bool	get_binary () const

Relatedness &	operator= (const Relatedness &rhs)

Public Member Functions inherited from Data
void	read_binary (std::istream &str)

void	write_binary (std::ostream &str) const

	Data (std::vector< std::string > &)

virtual const bool	indexed () const

virtual const std::string	sql_header (void) const
	Return the names of the columns, along with variable type.

virtual const std::string	sql_column_names (void) const
	Return the names of the columns.

virtual const std::string	sql_values (void) const
	Return the values to be placed in columns.

virtual void	sql_read (std::istream &)
	Reads the values...

Data Fields
char	delim
	the delimiter used when reading/writing the class in text mode.

std::string	X_str_
	the name of the first (X) sample in the compairison.

std::string	Y_str_
	the name of the second (Y) sample in the compairison.

id0_t	X_

id0_t	Y_
	the

id1_t	sites
	the number of sites analyzed.

float_t	e_X_ [E_LIM]

float_t	e_X_ll

float_t	e_Y_ [E_LIM]

float_t	e_Y_ll

float_t	f_X_

float_t	f_X_ll

float_t	f_Y_

float_t	f_Y_ll

float_t	theta_XY_

float_t	theta_XY_ll

float_t	gamma_XY_

float_t	gamma_XY_ll

float_t	gamma_YX_

float_t	gamma_YX_ll

float_t	delta_XY_

float_t	delta_XY_ll

float_t	Delta_XY_

float_t	Delta_XY_ll

float_t	null_ll_

float_t	max_ll_

Static Public Attributes
static const std::string	file_name =".rel"
	The dafualt extention for files.

static const std::string	table_name ="RELATEDNESS"
	Destination table in Db.

static const bool	binary =false

Static Public Attributes inherited from Data
static const std::string	file_name =".txt"
	The read function must be defined in the child class. More...

static const std::string	table_name ="NONE"
	The read function must be defined in the child class. More...

Static Private Member Functions
static Data *	create (const std::vector< std::string > &Columns)

Private Attributes
bool	likelihoods_
	indicate whether likelihoods are recorded.

Static Private Attributes
static const Registration	registered =Registration(Relatedness::table_name, Relatedness::create)

Additional Inherited Members
Static Public Member Functions inherited from Data
static Data *	new_from_str (const std::string &, const std::vector< std::string > &)
	Constructs an instance of the class Registered w/ string.

Detailed Description

Member Function Documentation

void Relatedness::zero ( void )

zeros statistics, but doesn't set names to empty.

< the number of sites analyzed.

The documentation for this class was generated from the following files: