A class that stores quartet information. More...

#include <quartet.h>

Public Member Functions
	quartet ()

	quartet (const count_t &A, const count_t &C, const count_t &G, const count_t &T, const count_t &N)

quartet &	operator+= (const quartet &x)

quartet	operator+ (const quartet &x) const

quartet &	operator= (const count_t &x)

quartet &	operator= (const quartet &rhs)

count_t	operator[] (const gt_t &x) const

count_t	operator[] (const Base &x) const

Data Fields
count_t	base [5]
	The count of the number of occurnaces of bases. What nucleotieds this cout represents is stored at the Locus.

bool	masked
	A flag that indicates whether or not functions should use information from this quartet_t. Functions may ignore this flag if such behavior is desired.

char	delim

Detailed Description

A class that stores quartet information.

Constructor & Destructor Documentation

quartet::quartet ( )

inline

The default constructor unmaskeds the site and zeros the base counts.

inline

This constructor explicitly sets the counts of A, C, G, T, and N and unmasked the site.

quartet quartet::operator+ ( const quartet & x ) const

inline

This operator adds the basecounts of the two quartet s together and returns them. masked is ignored.

quartet& quartet::operator+= ( const quartet & x )

inline

This operator is not implemented correctly. TODO fix it.

quartet& quartet::operator= ( const count_t & x )

inline

This operator copies the array count_t to base. Mask and delimiter is left untouched.

The documentation for this struct was generated from the following file: