MAPGD/commands_8h_source.html

/*These are the commands that mapgd can run.

 * Each one of them is a stand alone command line program the

 * mapgd calls in order to something or other... Perserve the

 * name space. Save the children. I don't know.

*/


#ifndef _COMMANDS_H_

#define _COMMANDS_H_


#include "estimate_pooled.h"

#include "estimate_individual.h"

#include "estimate_fst.h"

#include "relatedness.h"

#include "proview.h"

#include "filter.h"

#include "fastview.h"

#include "filter_pool.h"

#include "filter_genotype.h"

#include "map2genotype.h"

#include "linkage_disequilibrium.h"

#include "sam2idx.h"

#include "make_vcf.h"

#include "make_vcf2.h"

#include "read_vcf.h"

#include "mapgd_help.h"

#include "relatedness_test.h"

#include "test_keys.h"

#include "read_pheno.h"

#include "read_bed.h"

//#include "simulate.h"


#ifndef NOSQL

#include "writesql.h"

#include "readsql.h"

#endif


#endif