bcf2pro.h

/* An bcf  */

#ifndef _BCF2PRO_H_
#define _BCF2PRO_H_

#include <iostream>
#include <cfloat>
#include <iomanip>
#include <vector>

#include "typedef.h"
#include "datatypes.h"
#include "raw.h"
#include "stream_tools.h"

#include "map_file.h"


class Bcf2pro : public Locus  {
private:

//  bcf_init
//  bcf_destroy
//  bcf_read(htsFile *fp, const bcf_hdr_t *h, bcf1_t *v)
//  bcf_write(htsFile *fp, const bcf_hdr_t *h, bcf1_t *v)

public:
    Bcf2pro (){
//      Locus();
    };
    Bcf2pro (const std::vector <std::string> &str){
//..        Locus(str);
    };
    Bcf2pro (const count_t &){
//..        Locus(str);
    };


/*
    void set_header(const File_index &, const std::vector <std::string> &);

    void put (const Data *, ...);
    void get (Data *, ...) const;

    void put (const File_index &, const Locus &);
    void get (Locus &) const;

    //The mandatory fields.
    std::string id;
    Base ref;
    std::vector <std::string> alt;
    float_t qual;
    bool filter;
    std::vector <std::string> info;
*/
};

#endif