MAPGD/base_8h_source.html

 #ifndef BASE_H_

 #define BASE_H_


 #include <iostream>

 #include "typedef.h"

 #include <cfloat>

 #include <iomanip>


 // PLEASE LIMIT LINE LENGTH TO 79 CHARACTERS----------------------------------/


 class Base {

 private:


     bool masked;

 public:

     Base();


     Base(const char &);


     Base(const gt_t &);


     gt_t base;


     friend std::ostream& operator << (std::ostream&, const Base&);

     friend std::istream& operator >> (std::istream&, Base&);


     static char btoc(const gt_t &);

     static gt_t ctob(const char &);

 };


 #endif

Base
A class converts human readable bases to bit flags.
Definition: base.h:16

Base::base
gt_t base
Represents a single base.
Definition: base.h:32

Base::masked
bool masked
indicates the site has been masked.
Definition: base.h:21

Base::operator<<
friend std::ostream & operator<<(std::ostream &, const Base &)
use the << operator to write Allele.
Definition: base.cc:128

Base::operator>>
friend std::istream & operator>>(std::istream &, Base &)
use the >> operator to read Allele.
Definition: base.cc:120